Hydrogen transfer in large systems

Hydrogen, fot. Autor me (Image Fluorine.gif) [CC BY-SA 2.5
Reactions that transfer hydrogen or protons (hydrogen ions) are among the most elementary yet important reactions in industrial and biological systems. A new computational framework describes them efficiently and accurately for the first time.
Studying hydrogen transfer reactions experimentally is difficult because
 the reactions occur on ultrafast femtosecond time scales and the 
systems of enzymes are too large to obtain fine spectra. Describing them
 theoretically in large systems such as enzymes is challenging due to a 
proton's quantum dynamics.
Accurate computational algorithms require a balance between 
accounting for strong quantum effects among small degrees of freedom and
 weak quantum effects in the large system as a whole. Scientists have 
now developed such a method with EU support of the project 'VASPT2: A 
method for targeted quantum dynamics of hydrogen transfer reactions' 
(VASPT2).
Researchers divided the system into active regions (small and local)
 and bath regions (large and global). The team then applied a 
computationally heavy approach to the active regions and treated the 
rest of the system and coupling between two regions with a mean-field 
approach. The latter focuses on one particle or entity and replaces all 
interactions with the other entities with an average (mean) interaction.
 The new method was applied to formic acid, a prototype system with weak
 and strong correlations. Theoretical predictions of vibrational wave 
functions (fundamental spectral bands) were shown to match experimental 
values quite well.
The team also developed a method to describe semi-global potential 
energy surfaces related to hydrogen transfer reactions. Again, there is a
 trade-off between computational load and the need to describe quantum 
dynamics. VASPT2 members used a novel linear regression approach to fit 
the semi-global potential energy surface that minimises 'over-fitting' 
but does not create unphysical holes.
Implemented in a new programme suite for quantum dynamics called 
DYNAMOL, the novel frameworks provide computationally efficient and 
accurate descriptions of hydrogen transfer reactions. They are expected 
to help answer one of the most important open questions in biochemistry,
 namely whether or not quantum effects are important for enzymatic 
reactions. VASPT2 has thus made an invaluable contribution to the design
 of improved catalysis that is so important to many industrially 
relevant reactions.
published: 2015-03-11